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Online LZ77 parsing and matching statistics with RLBWTs

  • Hideo Bannai
  • , Travis Gagie
  • , Tomohiro I

研究成果: 書籍/レポート タイプへの寄稿会議への寄与

抄録

Lempel-Ziv 1977 (LZ77) parsing, matching statistics and the Burrows-Wheeler Transform (BWT) are all fundamental elements of stringology. In a series of recent papers, Policriti and Prezza (DCC 2016 and Algorithmica, CPM 2017) showed how we can use an augmented run-length compressed BWT (RLBWT) of the reverse TR of a text T, to compute offline the LZ77 parse of T in O(n log r) time and O(r) space, where n is the length of T and r is the number of runs in the BWT of TR. In this paper we first extend a well-known technique for updating an unaugmented RLBWT when a character is prepended to a text, to work with Policriti and Prezza's augmented RLBWT. This immediately implies that we can build online the LZ77 parse of T while still using O(n log r) time and O(r) space; it also seems likely to be of independent interest. Our experiments, using an extension of Ohno, Takabatake, I and Sakamoto's (IWOCA 2017) implementation of updating, show our approach is both time- and space-efficient for repetitive strings. We then show how to augment the RLBWT further -albeit making it static again and increasing its space by a factor proportional to the size of the alphabet -such that later, given another string S and O(log log n)-time random access to T, we can compute the matching statistics of S with respect to T in O(|S| log log n) time.

本文言語英語
ホスト出版物のタイトル29th Annual Symposium on Combinatorial Pattern Matching, CPM 2018
編集者Binhai Zhu, Gonzalo Navarro, David Sankoff
出版社Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing
ページ71-712
ページ数642
ISBN(電子版)9783959770743
DOI
出版ステータス出版済み - 5月 1 2018
イベント29th Annual Symposium on Combinatorial Pattern Matching, CPM 2018 - Qingdao, 中国
継続期間: 7月 2 20187月 4 2018

出版物シリーズ

名前Leibniz International Proceedings in Informatics, LIPIcs
105
ISSN(印刷版)1868-8969

その他

その他29th Annual Symposium on Combinatorial Pattern Matching, CPM 2018
国/地域中国
CityQingdao
Period7/2/187/4/18

!!!All Science Journal Classification (ASJC) codes

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