AtGenExpress, the first large-scale transcriptome data set in arabidopsis: Project summary and its practical applications

Eriko Sasaki, Tadao Asami, Yukihisa Shimada

研究成果: 書籍/レポート タイプへの寄稿

1 被引用数 (Scopus)

抄録

An international research effort, the AtGenExpress consortium was organized to make an important contribution to science community by collecting large-scale transcriptome data sets. The consortium detailed the developmental process (Schmid et al., 2005), stress responses (Kilian et al., 2007), hormone responses (Goda et al., 2008) and etc. in Arabidopsis. In this manuscript, we will summarize activities in AtGenExpress project. The data have been distributed from primary databases, such as, TAIR, GEO or NASCArrays. The data have been utilized actively to develop secondary web-based databases, data browsers (digital northern analysis tools), coexpression databases, or sample-wise correlation analysis tools. These web-tools are further facilitating plant science. We will also introduce data utilization in current plant biology especially in the area of plant hormone research.

本文言語英語
ホスト出版物のタイトルAdvances in Genetics Research, Volume 2
出版社Nova Science Publishers, Inc.
ページ197-211
ページ数15
ISBN(電子版)9781617614859
ISBN(印刷版)9781608761005
出版ステータス出版済み - 1月 1 2010
外部発表はい

!!!All Science Journal Classification (ASJC) codes

  • 生化学、遺伝学、分子生物学一般

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