Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains

Mauricio Kugler; Yushi Goto; Naoki Kawamura; Hirokazu Kobayashi; Tatsuya Yokota; Chika Iwamoto; Kenoki Ohuchida; Makoto Hashizume; Hidekata Hontani

doi:10.1007/978-3-030-00949-6_5

Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains

Mauricio Kugler, Yushi Goto, Naoki Kawamura, Hirokazu Kobayashi, Tatsuya Yokota, Chika Iwamoto, Kenoki Ohuchida, Makoto Hashizume, Hidekata Hontani

研究成果: 書籍/レポートタイプへの寄稿 › 会議への寄与

5 被引用数 (Scopus)

抄録

When applied to 3D image reconstruction, conventional landmark-based registration methods tend to generate unnatural vertical structures due to inconsistencies between the employed model and the real tissue. This paper demonstrates a fully non-rigid image registration method for 3D image reconstruction which considers the spatial continuity and smoothness of each constituent part of the microstructures in the tissue. Corresponding landmarks are detected along the images, defining a set of trajectories, which are smoothed out in order to define a diffeomorphic mapping. The resulting reconstructed 3D image preserves the original tissue architecture, allowing the observation of fine details and structures.

本文言語	英語
ホスト出版物のタイトル	Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings
編集者	Zeike Taylor, Hrvoje Bogunovic, David Snead, Mona K. Garvin, Xin Jan Chen, Francesco Ciompi, Yanwu Xu, Lena Maier-Hein, Mitko Veta, Emanuele Trucco, Danail Stoyanov, Nasir Rajpoot, Jeroen van der Laak, Anne Martel, Stephen McKenna
出版社	Springer Verlag
ページ	35-43
ページ数	9
ISBN（印刷版）	9783030009489
DOI	https://doi.org/10.1007/978-3-030-00949-6_5
出版ステータス	出版済み - 2018
イベント	1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018 - Granada, スペイン継続期間: 9月 16 2018 → 9月 20 2018

出版物シリーズ

名前	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
巻	11039 LNCS
ISSN（印刷版）	0302-9743
ISSN（電子版）	1611-3349

その他

その他	1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018
国/地域	スペイン
City	Granada
Period	9/16/18 → 9/20/18

!!!All Science Journal Classification (ASJC) codes

理論的コンピュータサイエンス
コンピュータサイエンス（全般）

UN SDG

この成果は、次の持続可能な開発目標に貢献しています

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10.1007/978-3-030-00949-6_5

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引用スタイル

Kugler, M., Goto, Y., Kawamura, N., Kobayashi, H., Yokota, T., Iwamoto, C., Ohuchida, K., Hashizume, M., & Hontani, H. (2018). Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. In Z. Taylor, H. Bogunovic, D. Snead, M. K. Garvin, X. J. Chen, F. Ciompi, Y. Xu, L. Maier-Hein, M. Veta, E. Trucco, D. Stoyanov, N. Rajpoot, J. van der Laak, A. Martel, & S. McKenna (Eds.), Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings (pp. 35-43). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11039 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-030-00949-6_5

Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. / Kugler, Mauricio; Goto, Yushi; Kawamura, Naoki その他.
Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. ed. / Zeike Taylor; Hrvoje Bogunovic; David Snead; Mona K. Garvin; Xin Jan Chen; Francesco Ciompi; Yanwu Xu; Lena Maier-Hein; Mitko Veta; Emanuele Trucco; Danail Stoyanov; Nasir Rajpoot; Jeroen van der Laak; Anne Martel; Stephen McKenna. Springer Verlag, 2018. p. 35-43 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11039 LNCS).

研究成果: 書籍/レポートタイプへの寄稿 › 会議への寄与

Kugler, M, Goto, Y, Kawamura, N, Kobayashi, H, Yokota, T, Iwamoto, C , Ohuchida, K, Hashizume, M & Hontani, H 2018, Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. in Z Taylor, H Bogunovic, D Snead, MK Garvin, XJ Chen, F Ciompi, Y Xu, L Maier-Hein, M Veta, E Trucco, D Stoyanov, N Rajpoot, J van der Laak, A Martel & S McKenna (eds), Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 11039 LNCS, Springer Verlag, pp. 35-43, 1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018, Granada, スペイン, 9/16/18. https://doi.org/10.1007/978-3-030-00949-6_5

Kugler M, Goto Y, Kawamura N, Kobayashi H, Yokota T, Iwamoto C その他. Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. In Taylor Z, Bogunovic H, Snead D, Garvin MK, Chen XJ, Ciompi F, Xu Y, Maier-Hein L, Veta M, Trucco E, Stoyanov D, Rajpoot N, van der Laak J, Martel A, McKenna S, editors, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Springer Verlag. 2018. p. 35-43. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-030-00949-6_5

Kugler, Mauricio ; Goto, Yushi ; Kawamura, Naoki その他. / Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. editor / Zeike Taylor ; Hrvoje Bogunovic ; David Snead ; Mona K. Garvin ; Xin Jan Chen ; Francesco Ciompi ; Yanwu Xu ; Lena Maier-Hein ; Mitko Veta ; Emanuele Trucco ; Danail Stoyanov ; Nasir Rajpoot ; Jeroen van der Laak ; Anne Martel ; Stephen McKenna. Springer Verlag, 2018. pp. 35-43 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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abstract = "When applied to 3D image reconstruction, conventional landmark-based registration methods tend to generate unnatural vertical structures due to inconsistencies between the employed model and the real tissue. This paper demonstrates a fully non-rigid image registration method for 3D image reconstruction which considers the spatial continuity and smoothness of each constituent part of the microstructures in the tissue. Corresponding landmarks are detected along the images, defining a set of trajectories, which are smoothed out in order to define a diffeomorphic mapping. The resulting reconstructed 3D image preserves the original tissue architecture, allowing the observation of fine details and structures.",

author = "Mauricio Kugler and Yushi Goto and Naoki Kawamura and Hirokazu Kobayashi and Tatsuya Yokota and Chika Iwamoto and Kenoki Ohuchida and Makoto Hashizume and Hidekata Hontani",

note = "Funding Information: This research was supported by JSPS KAKENHI Grant Number Publisher Copyright: {\textcopyright} 2018, Springer Nature Switzerland AG.; 1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018 ; Conference date: 16-09-2018 Through 20-09-2018",

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Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains

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出版物シリーズ

その他

!!!All Science Journal Classification (ASJC) codes

UN SDG

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