TY - JOUR
T1 - Two-State Exchange Dynamics in Membrane-Embedded Oligosaccharyltransferase Observed in Real-Time by High-Speed AFM
AU - Kawasaki, Yuki
AU - Ariyama, Hirotaka
AU - Motomura, Hajime
AU - Fujinami, Daisuke
AU - Noshiro, Daisuke
AU - Ando, Toshio
AU - Kohda, Daisuke
N1 - Funding Information:
We thank Drs. Ashutosh Srivastava and Florence Tama (Nagoya University, Japan) for technical assistance with the flexible fitting calculations, Dr. Noriyuki Kodera (Kanazawa University, Japan) for technical assistance with the HS-AFM measurements, and Ms. Maki Mitani (Kyushu University) for the oligosaccharyl transfer assay of the AfAglB* mutant. We thank the members of the Laboratory for Technical Support, Medical Institute of Bioregulation, Kyushu University, for DNA sequencing. This work was supported by Japan Society for the Promotion of Science (JSPS, Japan) KAKENHI Grant Numbers JP26119002 and JP19H05452 to D.K. and partly supported by JSPS KAKENHI Grant Number JP26119003 to T.A. The authors declare no competing interests.
Funding Information:
We thank Drs. Ashutosh Srivastava and Florence Tama (Nagoya University, Japan) for technical assistance with the flexible fitting calculations, Dr. Noriyuki Kodera (Kanazawa University, Japan) for technical assistance with the HS-AFM measurements, and Ms. Maki Mitani (Kyushu University) for the oligosaccharyl transfer assay of the AfAglB* mutant. We thank the members of the Laboratory for Technical Support, Medical Institute of Bioregulation, Kyushu University, for DNA sequencing. This work was supported by Japan Society for the Promotion of Science (JSPS, Japan) KAKENHI Grant Numbers JP26119002 and JP19H05452 to D.K. and partly supported by JSPS KAKENHI Grant Number JP26119003 to T.A.
Publisher Copyright:
© 2020 Elsevier Ltd
PY - 2020/11/6
Y1 - 2020/11/6
N2 - Oligosaccharyltransferase (OST) is a membrane-bound enzyme that catalyzes the transfer of oligosaccharide chains from lipid-linked oligosaccharides (LLO) to asparagine residues in polypeptide chains. Using high-speed atomic force microscopy (AFM), we investigated the dynamic properties of OST molecules embedded in biomembranes. An archaeal single-subunit OST protein was immobilized on a mica support via biotin–avidin interactions and reconstituted in a lipid bilayer. The distance between the top of the protein molecule and the upper surface of the lipid bilayer was monitored in real-time. The height of the extramembranous part exhibited a two-step variation with a difference of 1.8 nm. The high and low states are designated as state 1 and state 2, respectively. The transition processes between the two states fit well to single exponential functions, suggesting that the observed dynamic exchange is an intrinsic property of the archaeal OST protein. The two sets of cross peaks in the NMR spectra of the protein supported the conformational changes between the two states in detergent-solubilized conditions. Considering the height values measured in the AFM measurements, state 1 is closer to the crystal structure, and state 2 has a more compact form. Subsequent AFM experiments indicated that the binding of the sugar donor LLO decreased the structural fluctuation and shifted the equilibrium almost completely to state 1. This dynamic behavior is likely necessary for efficient catalytic turnover. Presumably, state 2 facilitates the immediate release of the bulky glycosylated polypeptide product, thus allowing OST to quickly prepare for the next catalytic cycle.
AB - Oligosaccharyltransferase (OST) is a membrane-bound enzyme that catalyzes the transfer of oligosaccharide chains from lipid-linked oligosaccharides (LLO) to asparagine residues in polypeptide chains. Using high-speed atomic force microscopy (AFM), we investigated the dynamic properties of OST molecules embedded in biomembranes. An archaeal single-subunit OST protein was immobilized on a mica support via biotin–avidin interactions and reconstituted in a lipid bilayer. The distance between the top of the protein molecule and the upper surface of the lipid bilayer was monitored in real-time. The height of the extramembranous part exhibited a two-step variation with a difference of 1.8 nm. The high and low states are designated as state 1 and state 2, respectively. The transition processes between the two states fit well to single exponential functions, suggesting that the observed dynamic exchange is an intrinsic property of the archaeal OST protein. The two sets of cross peaks in the NMR spectra of the protein supported the conformational changes between the two states in detergent-solubilized conditions. Considering the height values measured in the AFM measurements, state 1 is closer to the crystal structure, and state 2 has a more compact form. Subsequent AFM experiments indicated that the binding of the sugar donor LLO decreased the structural fluctuation and shifted the equilibrium almost completely to state 1. This dynamic behavior is likely necessary for efficient catalytic turnover. Presumably, state 2 facilitates the immediate release of the bulky glycosylated polypeptide product, thus allowing OST to quickly prepare for the next catalytic cycle.
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U2 - 10.1016/j.jmb.2020.09.017
DO - 10.1016/j.jmb.2020.09.017
M3 - Article
C2 - 33010307
AN - SCOPUS:85092528858
SN - 0022-2836
VL - 432
SP - 5951
EP - 5965
JO - Journal of Molecular Biology
JF - Journal of Molecular Biology
IS - 22
ER -