TY - JOUR
T1 - Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma
AU - Sato, Seijiro
AU - Nagahashi, Masayuki
AU - Koike, Terumoto
AU - Ichikawa, Hiroshi
AU - Shimada, Yoshifumi
AU - Watanabe, Satoshi
AU - Kikuchi, Toshiaki
AU - Takada, Kazuki
AU - Nakanishi, Ryota
AU - Oki, Eiji
AU - Okamoto, Tatsuro
AU - Akazawa, Kouhei
AU - Lyle, Stephen
AU - Ling, Yiwei
AU - Takabe, Kazuaki
AU - Okuda, Shujiro
AU - Wakai, Toshifumi
AU - Tsuchida, Masanori
N1 - Funding Information:
This project was supported by funding from Denka Co. Ltd. S. Sato is supported by the Japan Society for the Promotion of Science (JSPS) Grant-in-Aid for Scientific Research Grant Number 15K19931. M. Nagahashi is supported by the JSPS Grants-in-Aid for Scientific Research Grant Numbers 15H05676 and 15K15471, and the Takeda Science Foundation. T. Wakai is supported by the JSPS Grants-in-Aid for Scientific Research Grant Numbers 15H04927 and 16K15610. M. Tsuchida is supported by the JSPS Grant-in-Aid for Scientific Research Grant Number 15K10235. S. Lyle is supported by a grant from the Massachusetts Life Sciences Center. The remaining authors declare no conflict of interest. We are grateful to our colleagues Dr. Akihiko Kitahara and Dr. Tatsuya Goto for patient data collection, and to Mr. T Hatano and Ms. A. Kimoto for their technical support.
Publisher Copyright:
© 2018 The Author(s).
PY - 2018/12/1
Y1 - 2018/12/1
N2 - Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese patients and the Cancer Genome Atlas (TCGA), which majority of patients are from the US. We also aimed to examine prognostic impact of additional genomic alterations in patients harboring EGFR mutations. Genomic alterations were determined in Japanese patients with lung adenocarcinoma (N = 100) using NGS-based sequencing of 415 known cancer genes, and correlated with clinical outcome. EGFR active mutations, i.e., those involving exon 19 deletion or an L858R point mutation, were seen in 43% of patients. Some differences in driver gene mutation prevalence were observed between the Japanese cohort described in the present study and the TCGA. Japanese cohort had significantly more genomic alterations in cell cycle pathway, i.e., CDKN2B and RB1 than TCGA. Concurrent mutations, in genes such as CDKN2B or RB1, were associated with worse clinical outcome in patients with EGFR active mutations. Our data support the utility of comprehensive sequencing to detect concurrent genomic variations that may affect clinical outcomes in this disease.
AB - Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese patients and the Cancer Genome Atlas (TCGA), which majority of patients are from the US. We also aimed to examine prognostic impact of additional genomic alterations in patients harboring EGFR mutations. Genomic alterations were determined in Japanese patients with lung adenocarcinoma (N = 100) using NGS-based sequencing of 415 known cancer genes, and correlated with clinical outcome. EGFR active mutations, i.e., those involving exon 19 deletion or an L858R point mutation, were seen in 43% of patients. Some differences in driver gene mutation prevalence were observed between the Japanese cohort described in the present study and the TCGA. Japanese cohort had significantly more genomic alterations in cell cycle pathway, i.e., CDKN2B and RB1 than TCGA. Concurrent mutations, in genes such as CDKN2B or RB1, were associated with worse clinical outcome in patients with EGFR active mutations. Our data support the utility of comprehensive sequencing to detect concurrent genomic variations that may affect clinical outcomes in this disease.
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U2 - 10.1038/s41598-017-18560-y
DO - 10.1038/s41598-017-18560-y
M3 - Article
C2 - 29343775
AN - SCOPUS:85041558625
SN - 2045-2322
VL - 8
JO - Scientific reports
JF - Scientific reports
IS - 1
M1 - 1005
ER -