TY - JOUR
T1 - Density functional theory-based first principles calculations of rhododendrol-quinone reactions
T2 - Preference to thiol binding over cyclization
AU - Kishida, Ryo
AU - Kasai, Hideaki
AU - Aspera, Susan Meñez
AU - Arevalo, Ryan Lacdao
AU - Nakanishi, Hiroshi
N1 - Funding Information:
The authors thank Dr. Wilson Agerico Tan Diño for his interest in this research and for continuous support. This work is supported in part by MEXT Grant-in-Aid for Scientific Research (15H05736, 24246013, 15KT0062, and 26248006); JST ACCEL Program "Creation of the Functional Materials on the Basis of the Inter-Element-Fusion Strategy and their Innovative Applications"; and NEDO Project "RandD Towards Realizing an Innovative Energy Saving Hydrogen Society based on Quantum Dynamics Applications". Some of the numerical calculations presented here done using the computer facilities at the following institutes: CMC (Osaka University), ISSP, KEK, NIFS, and YITP.
Publisher Copyright:
©2017 The Physical Society of Japan.
PY - 2017
Y1 - 2017
N2 - Using density functional theory-based first principles calculations, we investigated the changes in the energetics and electronic structures of rhododendrol (RD)-quinone for the initial step of two important reactions, viz., cyclization and thiol binding, to give significant insights into the mechanism of the cause of cytotoxic effects. We found that RD-quinone in the electroneutral structure cannot undergo cyclization, indicating a slow cyclization of RD-quinone at neutral pH. Furthermore, using methane thiolate ion as a model thiol, we found that the oxidized form of the cyclized RD-quinone, namely RD-cyclic quinone, exhibited a reduced binding energy for thiols. However, this reduction of binding energy is clearly smaller than the case of dopaquinone, which is a molecule originally involved in the melanin synthesis. This study clearly shows that RD-quinone has a preference toward thiol bindings than cyclization compared to the case of dopaquinone. Considering that thiol bindings have been reported to induce cytotoxic effects in various ways, the preference toward thiol bindings is an important chemical property for the cytotoxicity caused by RD.
AB - Using density functional theory-based first principles calculations, we investigated the changes in the energetics and electronic structures of rhododendrol (RD)-quinone for the initial step of two important reactions, viz., cyclization and thiol binding, to give significant insights into the mechanism of the cause of cytotoxic effects. We found that RD-quinone in the electroneutral structure cannot undergo cyclization, indicating a slow cyclization of RD-quinone at neutral pH. Furthermore, using methane thiolate ion as a model thiol, we found that the oxidized form of the cyclized RD-quinone, namely RD-cyclic quinone, exhibited a reduced binding energy for thiols. However, this reduction of binding energy is clearly smaller than the case of dopaquinone, which is a molecule originally involved in the melanin synthesis. This study clearly shows that RD-quinone has a preference toward thiol bindings than cyclization compared to the case of dopaquinone. Considering that thiol bindings have been reported to induce cytotoxic effects in various ways, the preference toward thiol bindings is an important chemical property for the cytotoxicity caused by RD.
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U2 - 10.7566/JPSJ.86.024804
DO - 10.7566/JPSJ.86.024804
M3 - Article
AN - SCOPUS:85014647182
SN - 0031-9015
VL - 86
JO - journal of the physical society of japan
JF - journal of the physical society of japan
IS - 2
M1 - 024804
ER -