TY - JOUR
T1 - A novel cluster of mariner-like elements belonging to mellifera subfamily from spiders and insects
T2 - Implications of recent horizontal transfer on the South-West Islands of Japan
AU - Yamada, Kaori
AU - Kawanishi, Yuichi
AU - Yamada, Akinori
AU - Tokuda, Gaku
AU - Gurung, Raj Deep
AU - Sasaki, Takeshi
AU - Nakajima, Yumiko
AU - Maekawa, Hideaki
N1 - Funding Information:
Acknowledgments This work was supported by the project ‘‘Analysis for invasion mechanism into genome of movable element and its novel application for gene introduction.’’ funded by Ministry of Education, Culture, Sports and Science in Japan and sponsored by foundation of the University of the Ryukyus. We thank the members of Center of Molecular Biosciences, Tropical Biosphere Research Center, University of the Ryukyus specially Mr. S. Okuma, Ms. H. Iwasaki, Ms. H. Nakahara, and Ms. S. Gurung for their great help.
PY - 2014/4
Y1 - 2014/4
N2 - Mariner-like elements (MLEs) have been isolated from various eukaryotic genomes and they are divided into 15 subfamilies, including main five subfamilies: mauritiana, cecropia, mellifera/capitata, irritans, and elegans/briggsae. In the present study, MLEs belonging to mellifera subfamily were isolated from various spiders and insects (Hymenoptera and Lepidoptera) inhabiting the South-West Islands of Japan and neighboring regions. MLEs isolated from 15 different species formed a distinct novel cluster in mellifera subfamily. MLEs obtained from three different species [i.e., the bee Amegilla senahai subflavescens (Amsmar1), the wasp Campsomeris sp. (Casmar1), and the swallowtail butterfly Pachliopta aristolochiae (Paamar1)] contained an intact open reading frame that encoded a putative transposase. These transposases exhibited high similarity of 97.9 % among themselves. In case of Casmar1, the presence of an intact ORF was found in high frequencies (i.e., 11 out of 12 clones). In addition, these transposases also showed the presence of a terminal inverted repeat-binding motif, DD(34)D and two highly conserved amino acid motifs, (W/L)(I/L)PHQL and YSP(D/N)L(A/S)P. These two motifs differed from previously known motifs, WVPHEL and YSPDLAP. MLEs isolated from these three different species may have been inserted into their genomes by horizontal transfer. Furthermore, the presence of an intact ORF suggests that they are still active in habitats along these isolated islands.
AB - Mariner-like elements (MLEs) have been isolated from various eukaryotic genomes and they are divided into 15 subfamilies, including main five subfamilies: mauritiana, cecropia, mellifera/capitata, irritans, and elegans/briggsae. In the present study, MLEs belonging to mellifera subfamily were isolated from various spiders and insects (Hymenoptera and Lepidoptera) inhabiting the South-West Islands of Japan and neighboring regions. MLEs isolated from 15 different species formed a distinct novel cluster in mellifera subfamily. MLEs obtained from three different species [i.e., the bee Amegilla senahai subflavescens (Amsmar1), the wasp Campsomeris sp. (Casmar1), and the swallowtail butterfly Pachliopta aristolochiae (Paamar1)] contained an intact open reading frame that encoded a putative transposase. These transposases exhibited high similarity of 97.9 % among themselves. In case of Casmar1, the presence of an intact ORF was found in high frequencies (i.e., 11 out of 12 clones). In addition, these transposases also showed the presence of a terminal inverted repeat-binding motif, DD(34)D and two highly conserved amino acid motifs, (W/L)(I/L)PHQL and YSP(D/N)L(A/S)P. These two motifs differed from previously known motifs, WVPHEL and YSPDLAP. MLEs isolated from these three different species may have been inserted into their genomes by horizontal transfer. Furthermore, the presence of an intact ORF suggests that they are still active in habitats along these isolated islands.
UR - http://www.scopus.com/inward/record.url?scp=84899764859&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84899764859&partnerID=8YFLogxK
U2 - 10.1007/s10709-014-9762-9
DO - 10.1007/s10709-014-9762-9
M3 - Article
C2 - 24723149
AN - SCOPUS:84899764859
SN - 0016-6707
VL - 142
SP - 149
EP - 160
JO - Genetica
JF - Genetica
IS - 2
ER -