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Koji Atarashi

Professor

20062026

Research activity per year

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  • Defined human Clostridia consortia reverse colitis via dual effects of tryptophan metabolites on microbiota and immunity

    Oka, A., Bongers, G., Mishima, Y., Baltus, A. J., Gray, S. M., Liu, B., Herzog, J. W., Benedetto, J. R., Fan, T. J., Jang, J., Awoniyi, M., Rousta, E., Hao, L. Y., Gharaibeh, R. Z., Fodor, A. A., Ohkusa, T., Atarashi, K., Fukuda, S., Honda, K. & San Mateo, L. R. & 1 others, Sartor, R. B., Sept 9 2026, In: Cell Host and Microbe. 34, 9, p. 1746-1763.e15

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • immunoHuMiX: A personalizable gut-on-chip model for unraveling human microbiome–immune interactions

    De Rudder, C., Greenhalgh, K., Baginska, J., Martin-Gallausiaux, C., Grandmougin, L., Villette, R., Lucchetti, M., Hansen, B., Ostaszewski, M., Petrov, V. A., Atarashi, K., Weidert, L., Frachet Bour, A., Ternes, D., Ramiro-Garcia, J., Malabirade, A., Tanoue, T., Mac Giolla Eain, M., Letellier, E. & Barrett, M. & 7 others, Lacombe, J., Zenhausern, F., Guérin, C., Ollert, M., Seguin-Devaux, C., Honda, K. & Wilmes, P., 2026, (Accepted/In press) In: VIEW.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1   Link opens in a new tab Citation (Scopus)

  • Microbiota-mediated induction of beige adipocytes in response to dietary cues

    Tanoue, T., Nagayama, M., Roochana, A. J. A., Zimmerman, S., Ashenberg, O., Jain, T., Igarashi, R., Sasajima, S., Takeshita, K., Hetherington, N., Okahashi, N., Ueda, M., Konishi, M., Nakayama, Y., Minoda, A., Skelly, A. N., Minokoshi, Y., Pucci, N., Mende, D. R. & Arita, M. & 13 others, Yamamoto, H., Watanabe, S., Miura, K., Behie, S. W., Suda, W., Sato, T., Atarashi, K., Matsushita, M., Kajimura, S., Plichta, D. R., Saito, M., Xavier, R. J. & Honda, K., May 14 2026, In: Nature. 653, 8114, p. 499-509 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    7   Link opens in a new tab Citations (Scopus)

  • Metagenome-informed metaproteomics of the human gut microbiome, host, and dietary exposome uncovers signatures of health and inflammatory bowel disease

    Valdés-Mas, R., Leshem, A., Zheng, D., Cohen, Y., Kern, L., Zmora, N., He, Y., Katina, C., Eliyahu-Miller, S., Yosef-Hevroni, T., Richman, L., Raykhel, B., Allswang, S., Better, R., Shmueli, M., Saftien, A., Cullin, N., Slamovitz, F., Ciocan, D. & Ouyang, K. S. & 26 others, Mor, U., Dori-Bachash, M., Molina, S., Levin, Y., Atarashi, K., Jona, G., Puschhof, J., Harmelin, A., Stettner, N., Chen, M., Suez, J., Honda, K., Lieb, W., Bang, C., Kori, M., Maharshak, N., Merbl, Y., Shibolet, O., Halpern, Z., Shouval, D. S., Shamir, R., Franke, A., Abdeen, S. K., Shapiro, H., Savidor, A. & Elinav, E., Feb 20 2025, In: Cell. 188, 4, p. 1062-1083.e36

    Research output: Contribution to journal › Article › peer-review

    Open Access
    70   Link opens in a new tab Citations (Scopus)

  • Commensal consortia decolonize Enterobacteriaceae via ecological control

    Furuichi, M., Kawaguchi, T., Pust, M. M., Yasuma-Mitobe, K., Plichta, D. R., Hasegawa, N., Ohya, T., Bhattarai, S. K., Sasajima, S., Aoto, Y., Tuganbaev, T., Yaginuma, M., Ueda, M., Okahashi, N., Amafuji, K., Kiridoshi, Y., Sugita, K., Stražar, M., Avila-Pacheco, J. & Pierce, K. & 14 others, Clish, C. B., Skelly, A. N., Hattori, M., Nakamoto, N., Caballero, S., Norman, J. M., Olle, B., Tanoue, T., Suda, W., Arita, M., Bucci, V., Atarashi, K., Xavier, R. J. & Honda, K., Sept 26 2024, In: Nature. 633, 8031, p. 878-886 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    101   Link opens in a new tab Citations (Scopus)
View all 66 research outputs